Description Usage Arguments References
Filters out probes that have a signal below a specified detection threshold and that arent expressed in at least some specified fraction of observations. Also removes probes of "poor" or "no match" quality. See reference
1 |
data |
a LumiBatch |
pval |
a threshold for non-detection of a signal. a signal with detection
p-value above |
fval |
the smallest proportion of observations in which a signal should be
detected (as defined by |
verbose |
print info about filtered-out probes? T/F |
Günther C, Holden M, Holden L. Preprocessing of gene-expression data related to breast cancer diagnosis: SAMBA/35/14. https://www.nr.no/files/samba/smbi/note2015SAMBA3514preprocessing.pdf
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