GetRangesFromUniprot: GetRangesFromUniprot From a Uniprot isoform entry get the...
In 47Lies/isoformnspectRe: Companion package of a nextflow pipeline
Description
Usage
Arguments
Value
Examples
View source: R/GetRangesFromUniprot.R
Description
GetRangesFromUniprot From a Uniprot isoform entry get the variations from the canonical sequence. The start and end coordonate are isoform sequence based.
Usage
1
GetRangesFromUniprot(UNIPROT_ISOFORM_ENTRY = "O94875-10")
Arguments
UNIPROT_ISOFORM_ENTRY
Isoform entry name typically a capital letter
Value
IRanges object with each line representing the variant splicing of the Isoform. The class and the Title metadata columns are ready for a HTML span inclusion.
Examples
1
2
VariationRanges<-GetRangesFromUniprot("O94875-10")
VariationRanges
47Lies/isoformnspectRe documentation built on May 29, 2021, 3 p.m.
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Description Usage Arguments Value Examples
View source: R/GetRangesFromUniprot.R
Description
GetRangesFromUniprot From a Uniprot isoform entry get the variations from the canonical sequence. The start and end coordonate are isoform sequence based.
Usage
1 | GetRangesFromUniprot(UNIPROT_ISOFORM_ENTRY = "O94875-10")
|
Arguments
UNIPROT_ISOFORM_ENTRY |
Isoform entry name typically a capital letter |
Value
IRanges object with each line representing the variant splicing of the Isoform. The class and the Title metadata columns are ready for a HTML span inclusion.
Examples
1 2 | VariationRanges<-GetRangesFromUniprot("O94875-10")
VariationRanges
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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