API for 87875172/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Global functions
GRCm38_MT_fa Man page
GRCm38_MT_gtf Man page
align.rsubread Man page Source code
align.rsubread.unit Source code
collectqc Man page Source code
count.umi Man page Source code
count.umi.unit Source code
demultiplex Man page Source code
demultiplex.unit Source code
exampleannot Man page
examplebc Man page
examplefastq Man page
get.alignment.file.paths Source code
get.gene.annot Source code
gtf.db.read Source code
gview Man page Source code
log.messages Source code
parse.fastq Source code
parse.fname Source code
parse.input.files Source code
plot.MT.transcripts Source code
plot.MT.transcripts.fraction Source code
plot.frac.protein.coding.genes Source code
plot.frac.protein.coding.transcripts Source code
plot.gene.to.genome.fraction Source code
plot.gene.to.total.fraction Source code
plot.genes Source code
plot.genes.per.million.reads Source code
plot.genome.reads.fraction Source code
plot.reads.assignment Source code
plot.reads.mapped.to.genes Source code
plot.reads.mapped.to.genome Source code
plot.total.reads Source code
plot.transcripts Source code
propmapped_wrapper Source code
qcplot Man page Source code
remove.last.extension Source code
scruff Man page Source code
sink.reset Source code
stepping Man page Source code
strip.leading.underscore Source code
theme_Publication Man page Source code
to.bam Source code
87875172/scuff documentation built on April 8, 2018, 3:46 p.m.