Man pages for 87875172/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
| align.rsubread | A wrapper to 'Rsubread' read alignment |
| collectqc | Collect QC metrics |
| count.umi | Count the number of UMIs for each transcript and output... |
| demultiplex | Demultiplex cell barcodes and assign cell specific reads |
| exampleannot | Example annotation table |
| examplebc | Example barcodes table. |
| examplefastq | Example fastq 'ShortReadQ' objects |
| GRCm38_MT_fa | GRCm38 mitochondrial dna fasta sequence |
| GRCm38_MT_gtf | GRCm38 mitochondrial gtf file |
| gview | Visualize gene isoforms |
| qcplot | Visualize data quality |
| scruff | Run scruff pipeline |
| stepping | Visualize aligned reads |
| theme_Publication | ggplot publication theme Modify theme of ggplots. Make plots... |
