Files in 87875172/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/align.R R/count_umi.R R/data.R R/demultiplex.R R/qc.R R/scruff.R R/scruff_functions.R README.md data-raw/Homo_sapiens/GRCh38_MT.R data-raw/Homo_sapiens/example_annot.R
data-raw/Homo_sapiens/examplebc.txt
data-raw/Homo_sapiens/gtf/Homo_sapiens.GRCh38.89.chr_MT.gtf
data-raw/Homo_sapiens/rsubread_index/Homo_sapiens.GRCh38.dna.chromosome.MT.fa
data-raw/Mus_musculus/20171211_GRCm38_MT.py
data-raw/Mus_musculus/GCA_000001635.8_GRCm38.p6_genomic_modified_MT.fna
data-raw/Mus_musculus/GRCm38_MT_fa.R data-raw/Mus_musculus/GRCm38_MT_gtf.R
data-raw/Mus_musculus/GSE85755_Cel-seq_barcodes_96.txt
data-raw/Mus_musculus/Mus_musculus.GRCm38.90.MT.gtf
data-raw/Mus_musculus/example_annot.R data-raw/Mus_musculus/example_fastqs.R data-raw/Mus_musculus/examplebc.R
data-raw/Mus_musculus/vandenBrink_fastq/vandenBrink_1h1_L001_R1_001.fastq.gz
data-raw/Mus_musculus/vandenBrink_fastq/vandenBrink_1h1_L001_R2_001.fastq.gz
data-raw/Mus_musculus/vandenBrink_fastq/vandenBrink_b1_L001_R1_001.fastq.gz
data-raw/Mus_musculus/vandenBrink_fastq/vandenBrink_b1_L001_R2_001.fastq.gz
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_2.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_3.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_4.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_5.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_6.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_7.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_8.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_9.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_10.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_11.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_12.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_13.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_14.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_15.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_16.png
data/GRCm38_MT_fa.rda
data/GRCm38_MT_gtf.rda
data/exampleannot.rda
data/examplebc.rda
data/examplefastq.rda
inst/doc/scruff.Rmd inst/doc/scruff.pdf man/GRCm38_MT_fa.Rd man/GRCm38_MT_gtf.Rd man/align.rsubread.Rd man/collectqc.Rd man/count.umi.Rd man/demultiplex.Rd man/exampleannot.Rd man/examplebc.Rd man/examplefastq.Rd man/qcplot.Rd man/scruff.Rd man/stepping.Rd vignettes/scruff.Rmd vignettes/scruff.pdf
87875172/scuff documentation built on Dec. 22, 2017, 3:18 p.m.