Files in 87875172/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

.BBSoptions
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/alignRsubread.R R/countUMI.R R/data.R R/demultiplex.R R/gview.R R/qcplots.R R/rview.R R/scruff.R R/scruffFunctions.R R/tenxBamqc.R README.md data-raw/10x/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.R data-raw/10x/cbWhitelist737KAugust2016.R
data-raw/Mus_musculus/GSE85755_CEL-Seq_barcodes_96.txt
data-raw/Mus_musculus/barcodeExample.R
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_01.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_02.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_03.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_04.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_05.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_06.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_07.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_08.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_09.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_10.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_11.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_12.png
data-raw/figure/20180907_vdb_newplots_ercc_edit_Page_13.png
data/bamExample.rda
data/barcodeExample.rda
data/sceExample.rda
data/validCb.rda
inst/NEWS
inst/extdata/GRCm38_MT.fa
inst/extdata/GRCm38_MT.gtf
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv
inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
inst/extdata/vandenBrink_b1_L001_R1_001.fastq.gz
inst/extdata/vandenBrink_b1_L001_R2_001.fastq.gz
man/alignRsubread.Rd man/bamExample.Rd man/barcodeExample.Rd man/countUMI.Rd man/demultiplex.Rd man/gview.Rd man/qcplots.Rd man/rview.Rd man/sceExample.Rd man/scruff.Rd man/tenxBamqc.Rd man/validCb.Rd tests/testthat.R tests/testthat/testscruff.R vignettes/scruff.Rmd
87875172/scuff documentation built on Oct. 18, 2018, 5:36 a.m.