Files in 87875172/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

.BBSoptions
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/alignRsubread.R R/countUMI.R R/data.R R/demultiplex.R R/gview.R R/qcplots.R R/rview.R R/scruff.R R/scruffFunctions.R README.md
data-raw/Mus_musculus/GSE85755_CEL-Seq_barcodes_96.txt
data-raw/Mus_musculus/barcodeExample.R
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_2.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_3.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_4.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_5.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_6.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_7.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_8.png
data-raw/figure/20171204_qc_reads_assigned_excl_bulk_Page_9.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_10.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_11.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_12.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_13.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_14.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_15.png
data-raw/figure/20171204_vandenBrink_qc_color_Page_16.png
data/bamExample.rda
data/barcodeExample.rda
data/sceExample.rda
inst/NEWS
inst/extdata/GRCm38_MT.fa
inst/extdata/GRCm38_MT.gtf
inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
inst/extdata/vandenBrink_b1_L001_R1_001.fastq.gz
inst/extdata/vandenBrink_b1_L001_R2_001.fastq.gz
man/alignRsubread.Rd man/bamExample.Rd man/barcodeExample.Rd man/countUMI.Rd man/demultiplex.Rd man/gview.Rd man/qcplots.Rd man/rview.Rd man/sceExample.Rd man/scruff.Rd tests/testthat.R tests/testthat/testscruff.R vignettes/scruff.Rmd
87875172/scuff documentation built on July 11, 2018, 10:57 a.m.