alignRsubread | A wrapper to 'Rsubread' read alignment function 'align' |
bamExample | Example GAlignments Object |
barcodeExample | A vector of example cell barcodes. |
cbtop10000 | Top 10,000 rows for v1, v2, and v3 cell barcode whitelist... |
countUMI | Count the number of UMIs for each gene and output count... |
demultiplex | Demultiplex cell barcodes and assign cell specific reads |
gview | Visualize gene isoforms |
qcplots | Visualize data quality |
rview | Visualize aligned reads |
sceExample | Example SingleCellExperiment Object |
scruff | Run scruff pipeline |
tenxBamqc | Generate and output 10X read alignment data quality metrics |
validCb | Cell barcode whitelist (737K-august-2016.txt) |
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