fastanalyze: fastanalyze() gives information about a fasta file

In A-BN/fastaUtils: Simple fasta exploration and manipulation

fastanalyze() gives information about a fasta file

Description

it counts the number of contigs, their size and the total size. It also calculates the N50 / L50, the N90 / L90 and prints a synthetic plot suming up all these results

Usage

fastanalyze(fasta_file, metrics = TRUE, plot = FALSE, verbose = TRUE)

Arguments

fasta_file	path of the fasta file
metrics	boolean, indicates whether the metrics should be printed
plot	boolean, indicates whether a plot should be generated
verbose	boolean, indicates whether each contig name and size be reported. default: TRUE

Value

Whatever you want

A-BN/fastaUtils documentation built on March 29, 2023, 10:49 p.m.