plot_contigs: Calculate assembly statistics N50, L50, N90, L90
In A-BN/fastaUtils: Simple fasta exploration and manipulation
plot_contigs R Documentation
Calculate assembly statistics N50, L50, N90, L90
Description
Calculate assembly statistics N50, L50, N90, L90
Usage
plot_contigs(contig_df, metrics_df)
Arguments
contigs_df,
a contigs data.frame
with three cols, name, size and cum_size
Value
a plot of the contig cumulative size as a function
of the log10 of the number of contigs and Nx, Lx metrics
and dashed lines representing N50 / L50 and N90 / L90 values
A-BN/fastaUtils documentation built on March 29, 2023, 10:49 p.m.
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| plot_contigs | R Documentation |
Calculate assembly statistics N50, L50, N90, L90
Description
Calculate assembly statistics N50, L50, N90, L90
Usage
plot_contigs(contig_df, metrics_df)
Arguments
contigs_df, |
a contigs data.frame with three cols, name, size and cum_size |
Value
a plot of the contig cumulative size as a function of the log10 of the number of contigs and Nx, Lx metrics and dashed lines representing N50 / L50 and N90 / L90 values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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