Files in ABMI/RanitidineCancerRisk
A Package to compare the risks of cancer between H2 blockers
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
HydraConfig.json
LICENSE
NAMESPACE
R/CohortMethod.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Diagnostics.R
R/Export.R
R/Feasibility.R
R/Main.R
R/Package.R
R/ShinyApps.R
R/SubgroupCovariateBuilder.R
R/SubmitResults.R
R/SynthesizePositiveControls.R
README.md
RanitidineCancerRisk.Rproj
StudyPackageSetup.md
documents/H2RACancerRisk_Protocol_Feasibility.docx
documents/H2RACancerRisk_Protocol_V0.5.docx
extras/CodeToRun.R
extras/CreateStudyAnalysisDetails.R
extras/PackageMaintenance.R
extras/createTcosOfInterest.r
extras/negative_controls.csv
inst/cohorts/Bladder_cancer.json
inst/cohorts/Breast_cancer.json
inst/cohorts/Broad_Bladder_cancer.json
inst/cohorts/Broad_Breast_cancer.json
inst/cohorts/Broad_Cancer.json
inst/cohorts/Broad_Cancer_except_skin.json
inst/cohorts/Broad_Cancer_except_thyroid.json
inst/cohorts/Broad_Cervix_uteri_cancer.json
inst/cohorts/Broad_Colorectal_cancer.json
inst/cohorts/Broad_Corpus_uteri_cancer.json
inst/cohorts/Broad_Esophagus_cancer.json
inst/cohorts/Broad_GB_and_biliary_tract_cancer.json
inst/cohorts/Broad_Head_n_neck_cancer.json
inst/cohorts/Broad_Leukemia.json
inst/cohorts/Broad_Liver_cancer.json
inst/cohorts/Broad_Lung_cancer.json
inst/cohorts/Broad_Ovary_cancer.json
inst/cohorts/Broad_Pancreas_cancer.json
inst/cohorts/Broad_Prostate_cancer.json
inst/cohorts/Broad_Stomach_cancer.json
inst/cohorts/Broad_Thyroid_cancer.json
inst/cohorts/Cancer.json
inst/cohorts/Cancer_death.json
inst/cohorts/Cancer_except_skin.json
inst/cohorts/Cancer_except_thyroid.json
inst/cohorts/Cervix_uteri_cancer.json
inst/cohorts/Cimetidine_user.json
inst/cohorts/Cimetidine_user_without_gastric_ulcer.json
inst/cohorts/Colorectal_cancer.json
inst/cohorts/Corpus_uteri_cancer.json
inst/cohorts/Esophagus_cancer.json
inst/cohorts/Famotidine_user.json
inst/cohorts/Famotidine_user_without_gastric_ulcer.json
inst/cohorts/GB_and_biliary_tract_cancer.json
inst/cohorts/Gynecomastia.json
inst/cohorts/Head_n_neck_cancer.json
inst/cohorts/Lafutidine_user.json
inst/cohorts/Lafutidine_user_without_gastric_ulcer.json
inst/cohorts/Leukemia.json
inst/cohorts/Liver_cancer.json
inst/cohorts/Lung_cancer.json
inst/cohorts/Nizatidine_user.json
inst/cohorts/Nizatidine_user_without_gastric_ulcer.json
inst/cohorts/Other_h2.json
inst/cohorts/Other_h2_without_gastric_ulcer.json
inst/cohorts/Ovary_cancer.json
inst/cohorts/Pancreas_cancer.json
inst/cohorts/Prostate_cancer.json
inst/cohorts/Ranitidine_user.json
inst/cohorts/Ranitidine_user_without_gastric_ulcer.json
inst/cohorts/Roxatidine_user.json
inst/cohorts/Roxatidine_user_without_gastric_ulcer.json
inst/cohorts/Stomach_cancer.json
inst/cohorts/Thyroid_cancer.json
inst/settings/CohortsToCreate.csv
inst/settings/NegativeControls.csv
inst/settings/TcosOfInterest.csv
inst/settings/cmAnalysisFeasibilityList.json
inst/settings/cmAnalysisList.json
inst/settings/conceptSetExpression.csv
inst/settings/positiveControlSynthArgs.json
inst/shiny/EvidenceExplorer/DataPulls.R
inst/shiny/EvidenceExplorer/EvidenceExplorer.Rproj
inst/shiny/EvidenceExplorer/PlotsAndTables.R
inst/shiny/EvidenceExplorer/Table1Specs.csv
inst/shiny/EvidenceExplorer/global.R
inst/shiny/EvidenceExplorer/server.R
inst/shiny/EvidenceExplorer/ui.R
inst/sql/sql_server/Bladder_cancer.sql
inst/sql/sql_server/Breast_cancer.sql
inst/sql/sql_server/Broad_Bladder_cancer.sql
inst/sql/sql_server/Broad_Breast_cancer.sql
inst/sql/sql_server/Broad_Cancer.sql
inst/sql/sql_server/Broad_Cancer_except_skin.sql
inst/sql/sql_server/Broad_Cancer_except_thyroid.sql
inst/sql/sql_server/Broad_Cervix_uteri_cancer.sql
inst/sql/sql_server/Broad_Colorectal_cancer.sql
inst/sql/sql_server/Broad_Corpus_uteri_cancer.sql
inst/sql/sql_server/Broad_Esophagus_cancer.sql
inst/sql/sql_server/Broad_GB_and_biliary_tract_cancer.sql
inst/sql/sql_server/Broad_Head_n_neck_cancer.sql
inst/sql/sql_server/Broad_Leukemia.sql
inst/sql/sql_server/Broad_Liver_cancer.sql
inst/sql/sql_server/Broad_Lung_cancer.sql
inst/sql/sql_server/Broad_Ovary_cancer.sql
inst/sql/sql_server/Broad_Pancreas_cancer.sql
inst/sql/sql_server/Broad_Prostate_cancer.sql
inst/sql/sql_server/Broad_Stomach_cancer.sql
inst/sql/sql_server/Broad_Thyroid_cancer.sql
inst/sql/sql_server/Cancer.sql
inst/sql/sql_server/Cancer_death.sql
inst/sql/sql_server/Cancer_except_skin.sql
inst/sql/sql_server/Cancer_except_thyroid.sql
inst/sql/sql_server/Cervix_uteri_cancer.sql
inst/sql/sql_server/Cimetidine_user.sql
inst/sql/sql_server/Cimetidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/Colorectal_cancer.sql
inst/sql/sql_server/Corpus_uteri_cancer.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateSubgroups.sql
inst/sql/sql_server/DropSubgroupTempTables.sql
inst/sql/sql_server/Esophagus_cancer.sql
inst/sql/sql_server/Famotidine_user.sql
inst/sql/sql_server/Famotidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/GB_and_biliary_tract_cancer.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/GetSubgroups.sql
inst/sql/sql_server/Gynecomastia.sql
inst/sql/sql_server/Head_n_neck_cancer.sql
inst/sql/sql_server/Lafutidine_user.sql
inst/sql/sql_server/Lafutidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/Leukemia.sql
inst/sql/sql_server/Liver_cancer.sql
inst/sql/sql_server/Lung_cancer.sql
inst/sql/sql_server/NegativeControlOutcomes.sql
inst/sql/sql_server/Nizatidine_user.sql
inst/sql/sql_server/Nizatidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/Other_h2.sql
inst/sql/sql_server/Other_h2_without_gastric_ulcer.sql
inst/sql/sql_server/Ovary_cancer.sql
inst/sql/sql_server/Pancreas_cancer.sql
inst/sql/sql_server/Prostate_cancer.sql
inst/sql/sql_server/Ranitidine_user.sql
inst/sql/sql_server/Ranitidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/Roxatidine_user.sql
inst/sql/sql_server/Roxatidine_user_without_gastric_ulcer.sql
inst/sql/sql_server/Stomach_cancer.sql
inst/sql/sql_server/Thyroid_cancer.sql
man/RanitidineCancerRisk-package.Rd
man/createCohorts.Rd
man/createSubgroupCovariateSettings.Rd
man/execute.Rd
man/exportResultFeas.Rd
man/exportResults.Rd
man/generateDiagnostics.Rd
man/generateFeasibilityDiagnostics.Rd
man/getDbSubgroupCovariateData.Rd
man/launchEvidenceExplorer.Rd
man/prepareForEvidenceExplorer.Rd
man/runCohortMethod.Rd
man/runFeasibility.Rd
man/synthesizePositiveControls.Rd
man/uploadResults.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
