arraymodel: RunDM
In AGRF/arraydm: AGRF Differential Methylation Analysis Package
Description
Usage
Arguments
Value
Description
A function to run differential methylation
Usage
1
arraymodel(contractid, mdata, sampledata, contrastl, workdir = NULL)
Arguments
contractid
Character. The name of the contract or other value
mdata
Data Frame. Cleaned, quality controlled M-values
sampledata
Data Frame. The project samplesheet. Generate manually or in arraydm::readdata().
workdir
Character. Where to save the results (Default: working directory)
contrasts
List. Named list with contrasts to apply
Value
A data frame of modelling results
AGRF/arraydm documentation built on Dec. 2, 2020, 12:14 p.m.
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Description Usage Arguments Value
Description
A function to run differential methylation
Usage
1 | arraymodel(contractid, mdata, sampledata, contrastl, workdir = NULL)
|
Arguments
contractid |
Character. The name of the contract or other value |
mdata |
Data Frame. Cleaned, quality controlled M-values |
sampledata |
Data Frame. The project samplesheet. Generate manually or in arraydm::readdata(). |
workdir |
Character. Where to save the results (Default: working directory) |
contrasts |
List. Named list with contrasts to apply |
Value
A data frame of modelling results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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