arraysumm: Summarise Models
In AGRF/arraydm: AGRF Differential Methylation Analysis Package
Description
Usage
Arguments
Value
Description
A function to collate and report differential methylation results
Usage
1
Arguments
contractid
Character. The name of the contract or other value
bdata
Data Frame. Cleaned, quality controlled B-values
sampledata
Data Frame. The project samplesheet.Generate manually or in arraydm::readdata().
workdir
Character. Where to save the plots. (Default: working directory)
contrastm
Matrix. A matrix of contrasts
contrasts
List. A named list with contrasts to apply
Value
Annotated data frames of DM results, heatmaps and volcano plots
AGRF/arraydm documentation built on Dec. 2, 2020, 12:14 p.m.
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Description Usage Arguments Value
Description
A function to collate and report differential methylation results
Usage
1 |
Arguments
contractid |
Character. The name of the contract or other value |
bdata |
Data Frame. Cleaned, quality controlled B-values |
sampledata |
Data Frame. The project samplesheet.Generate manually or in arraydm::readdata(). |
workdir |
Character. Where to save the plots. (Default: working directory) |
contrastm |
Matrix. A matrix of contrasts |
contrasts |
List. A named list with contrasts to apply |
Value
Annotated data frames of DM results, heatmaps and volcano plots
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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