Man pages for ATpoint/diffanalyseR
Wrapper functions for common tasks related to analysis of NGS counts data
| AverageBy | Average a numeric matrix or data.frame by columns |
| binMatrix | Column-wise binning of a numeric matrix |
| gosty | Functional enrichment of a gene list with gprofiler2 |
| makeAllContrasts | Make all possible unique pairwise contrasts |
| MAplotFromCts | Pairwise MA-plots using smoothScatter for QC purposes |
| MostVariableRows | Get most variable rows from a numeric matrix#' |
| NormOffsetsFromTxLength | Combine AveTxLen with norm.factors into offsets |
| res_edgeR | Automate the glmQLFit/glmTreat functions from edgeR |
| rowScale | Row scaling with matrixStats |
| run_apeglm | A function to test contrasts via DESeq2/lfcShrink/apeglm |
| ScaleByQuantile | Winsorize a count matrix using fixed quantiles by row |
| smoothMAplot | A function to produce MA-plots. |
| string2chr | Convert strsplit to data.frame |
