AverageBy: Average a numeric matrix or data.frame by columns
In ATpoint/diffanalyseR: Wrapper functions for common tasks related to analysis of NGS counts data
Description
Usage
Arguments
Author(s)
Examples
View source: R/src_AverageBy.R
Description
Function takes a named list with column numbers to be averaged. Unpaired columns are simply returned as-is.
Usage
1
Arguments
cts
a numeric matrix or data.frame
by
a named list with column numbers to be averaged, colname will be the respective list name
Author(s)
Alexander Toenges
Examples
1
2
3
4
5
cts <- lapply(seq(1,5), function(x) rnorm(10)) %>% do.call(cbind, .)
colnames(cts) <- c("A_rep1", "B_rep1", "A_rep2", "C_rep1", "B_rep2")
rownames(cts) <- paste0("Gene", seq(1,nrow(cts)))
by <- sapply(unique(gsub("_rep.*", "", colnames(cts))), function(x) grep(paste0("^", x, "_rep"), colnames(cts)))
AverageBy(cts,by)
ATpoint/diffanalyseR documentation built on Oct. 8, 2021, 10:11 p.m.
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Description Usage Arguments Author(s) Examples
View source: R/src_AverageBy.R
Description
Function takes a named list with column numbers to be averaged. Unpaired columns are simply returned as-is.
Usage
1 |
Arguments
cts |
a numeric matrix or data.frame |
by |
a named list with column numbers to be averaged, colname will be the respective list name |
Author(s)
Alexander Toenges
Examples
1 2 3 4 5 | cts <- lapply(seq(1,5), function(x) rnorm(10)) %>% do.call(cbind, .)
colnames(cts) <- c("A_rep1", "B_rep1", "A_rep2", "C_rep1", "B_rep2")
rownames(cts) <- paste0("Gene", seq(1,nrow(cts)))
by <- sapply(unique(gsub("_rep.*", "", colnames(cts))), function(x) grep(paste0("^", x, "_rep"), colnames(cts)))
AverageBy(cts,by)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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