Files in AbhishekSinha28/tcgaCleaneR
TGCA Data Analysis
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
Project_Presentation_31322743.pdf
R/Anova.R
R/PCA.R
R/Plot_PCA.R
R/RUV_III.R
R/brca.data.R
R/checkNCG.R
R/filter_genes.R
R/filter_low_genes.R
R/gene_correlation.R
R/library.size.R
R/library_size_filter.R
R/pc_reg_corr.R
R/purity_filter.R
R/ruv_prps.R
R/ruv_prps_plot.R
R/study_design.R
README.Rmd
README.md
_pkgdown.yml
data/brca.data.rda
data_raw/tgca_breast_cancer_data.R
docs/404.html
docs/articles/index.html
docs/articles/tcgaCleaneR_vignette.html
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-10-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-14-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-14-2.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-14-3.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-15-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-16-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-18-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-19-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-26-1.png
docs/articles/tcgaCleaneR_vignette_files/figure-html/unnamed-chunk-8-1.png
docs/articles/tcgaCleaneR_vignette_files/header-attrs-2.11/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/brca.data.html
docs/reference/checkNegCtrlGenes.html
docs/reference/computeANOVA.html
docs/reference/computeCorr.html
docs/reference/computePCA.html
docs/reference/createPRPS.html
docs/reference/figures/README-unnamed-chunk-10-1.png
docs/reference/figures/README-unnamed-chunk-14-1.png
docs/reference/figures/README-unnamed-chunk-14-2.png
docs/reference/figures/README-unnamed-chunk-14-3.png
docs/reference/figures/README-unnamed-chunk-15-1.png
docs/reference/figures/README-unnamed-chunk-16-1.png
docs/reference/figures/README-unnamed-chunk-23-1.png
docs/reference/figures/README-unnamed-chunk-8-1.png
docs/reference/filterGenesByBiotypes.html
docs/reference/filterLowExprGenes.html
docs/reference/filterSamplesByLibSize.html
docs/reference/filterSamplesByPurity.html
docs/reference/index.html
docs/reference/plotLibSize-1.png
docs/reference/plotLibSize.html
docs/reference/plotPC.html
docs/reference/plotPCsVar.html
docs/reference/plotPRPS.html
docs/reference/plotStudyOutline.html
docs/reference/runRUVIII.html
docs/reference/runRUV_III_PRPS.html
docs/sitemap.xml
man/brca.data.Rd
man/checkNegCtrlGenes.Rd
man/computeANOVA.Rd
man/computeCorr.Rd
man/computePCA.Rd
man/createPRPS.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-14-2.png
man/figures/README-unnamed-chunk-14-3.png
man/figures/README-unnamed-chunk-15-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-23-1.png
man/figures/README-unnamed-chunk-8-1.png
man/filterGenesByBiotypes.Rd
man/filterLowExprGenes.Rd
man/filterSamplesByLibSize.Rd
man/filterSamplesByPurity.Rd
man/plotLibSize.Rd
man/plotPC.Rd
man/plotPCsVar.Rd
man/plotPRPS.Rd
man/plotStudyOutline.Rd
man/runRUVIII.Rd
man/runRUV_III_PRPS.Rd
tcgaCleaneR.Rproj
vignettes/.gitignore
vignettes/tcgaCleaneR_vignette.Rmd
