plotLibSize: Library Size

In AbhishekSinha28/tcgaCleaneR: TGCA Data Analysis

Library Size

Description

This function is a part of the data analysis functionality of tcgaCleaneR. It allows user to analyze the Library Size bias, a technical bias in the TCGA RNA-seq. The user can input the SummarizedExperiment S4 class Cancer Dataset (e.g. TCGA dataset) and the type of plot to analyse variations in library size across years and samples.

Usage

plotLibSize(data, plot_type)

Arguments

data	SummarizedExperiment S4 class Dataset. E.g. TCGA Dataset.
plot_type	character: Plot type

Value

Scatter Plot, Box plot

Examples

plotLibSize(data = brca.data, plot_type = "Scatterplot")
## Not run: 
plotLibSize(data = brca.data, plot_type = "Boxplot")

## End(Not run)

AbhishekSinha28/tcgaCleaneR documentation built on May 6, 2022, 6:46 a.m.