filterSamplesByPurity: Filter Samples based on Tumor Purity
In AbhishekSinha28/tcgaCleaneR: TGCA Data Analysis
View source: R/purity_filter.R
filterSamplesByPurity R Documentation
Filter Samples based on Tumor Purity
Description
This function is a part of the data wrangling functionality of tcgaCleaneR.
It allows user to handle sample purity in SummarizedExperiment S4 class Cancer Dataset (e.g. TCGA dataset) by
filtering out the samples that are above a specific purity threshold.
Usage
filterSamplesByPurity(data, purity_cutoff)
Arguments
data
SummarizedExperiment S4 class Dataset. E.g. TCGA Dataset.
purity_cutoff
numeric: Sample purity cutoff
Value
S4 data object
Examples
filterSamplesByPurity(data= brca.data,purity_cutoff= 0.496)
AbhishekSinha28/tcgaCleaneR documentation built on May 6, 2022, 6:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/purity_filter.R
| filterSamplesByPurity | R Documentation |
Filter Samples based on Tumor Purity
Description
This function is a part of the data wrangling functionality of tcgaCleaneR.
It allows user to handle sample purity in SummarizedExperiment S4 class Cancer Dataset (e.g. TCGA dataset) by
filtering out the samples that are above a specific purity threshold.
Usage
filterSamplesByPurity(data, purity_cutoff)
Arguments
data |
SummarizedExperiment S4 class Dataset. E.g. TCGA Dataset. |
purity_cutoff |
numeric: Sample purity cutoff |
Value
S4 data object
Examples
filterSamplesByPurity(data= brca.data,purity_cutoff= 0.496)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.