data-raw/saveg_information.R
In Acanthiza/envEcosystems: Create Ecosystem Definitions
library(magrittr)
cut_cov <- tibble::tribble(
~cov_thresh, ~pfc
, 200, "Extra dense"
, 70, "Dense"
, 30, "Mid-dense"
, 10, "Sparse"
, 5, "Very sparse"
)
cut_ht <- tibble::tribble(
~ht_thresh
, 200
, 30
, 10
, 5
, 3
, 2
, 1
, 0.5
, 0
)
sa_vsf <- tibble::tribble(
~cov_thresh, ~ht_thresh, ~str, ~storey, ~sa_vsf
, 100, 200, "Trees", "over", "Tall closed forest"
, 70, 200, "Trees", "over", "Tall open forest"
, 30, 200, "Trees", "over", "Tall woodland"
, 10, 200, "Trees", "over", "Tall open woodland"
, 100, 30, "Trees", "over", "Closed forest"
, 70, 30, "Trees", "over", "Open forest"
, 30, 30, "Trees", "over", "Woodland"
, 10, 30, "Trees", "over", "Open woodland"
, 100, 10, "Trees", "over", "Low closed forest"
, 70, 10, "Trees", "over", "Low open forest"
, 30, 10, "Trees", "over", "Low woodland"
, 10, 10, "Trees", "over", "Low open woodland"
, 100, 5, "Trees", "over", "Very low closed forest"
, 70, 5, "Trees", "over", "Very low open forest"
, 30, 5, "Trees", "over", "Very low woodland"
, 10, 5, "Trees", "over", "Very low open woodland"
, 100, 3, "Trees", "over", "Very low closed forest"
, 70, 3, "Trees", "over", "Very low open forest"
, 30, 3, "Trees", "over", "Very low woodland"
, 10, 3, "Trees", "over", "Very low open woodland"
, 100, 2, "Trees", "over", "Very low closed forest"
, 70, 2, "Trees", "over", "Very low open forest"
, 30, 2, "Trees", "over", "Very low woodland"
, 10, 2, "Trees", "over", "Very low open woodland"
#, 100, 10, "Mallees", "over", "Tall closed mallee"
#, 70, 10, "Mallees", "over", "Tall mallee"
#, 30, 10, "Mallees", "over", "Tall open mallee"
#, 10, 10, "Mallees", "over", "Tall very open mallee"
, 100, 5, "Mallees", "over", "Closed mallee"
, 70, 5, "Mallees", "over", "Mallee"
, 30, 5, "Mallees", "over", "Open mallee"
, 10, 5, "Mallees", "over", "Very open mallee"
, 100, 3, "Mallees", "over", "Closed low mallee"
, 70, 3, "Mallees", "over", "Low mallee"
, 30, 3, "Mallees", "over", "Open low mallee"
, 10, 3, "Mallees", "over", "Very open low mallee"
, 100, 2, "Mallees", "over", "Closed low mallee"
, 70, 2, "Mallees", "over", "Low mallee"
, 30, 2, "Mallees", "over", "Open low mallee"
, 10, 2, "Mallees", "over", "Very open low mallee"
, 100, 1, "Mallees", "over", "Closed low mallee"
, 70, 1, "Mallees", "over", "Low mallee"
, 30, 1, "Mallees", "over", "Open low mallee"
, 10, 1, "Mallees", "over", "Very open low mallee"
, 100, 3, "Shrubs", "mid", "Tall closed shrubland"
, 70, 3, "Shrubs", "mid", "Tall shrubland"
, 30, 3, "Shrubs", "mid", "Tall open shrubland"
, 10, 3, "Shrubs", "mid", "Tall very open shrubland"
, 100, 2, "Shrubs", "mid", "Closed shrubland"
, 70, 2, "Shrubs", "mid", "Shrubland"
, 30, 2, "Shrubs", "mid", "Open shrubland"
, 10, 2, "Shrubs", "mid", "Very open shrubland"
, 100, 1, "Shrubs", "mid", "Low closed shrubland"
, 70, 1, "Shrubs", "mid", "Low shrubland"
, 30, 1, "Shrubs", "mid", "Low open shrubland"
, 10, 1, "Shrubs", "mid", "Low very open shrubland"
, 100, 0.5, "Shrubs", "ground", "Low closed shrubland"
, 70, 0.5, "Shrubs", "ground", "Low shrubland"
, 30, 0.5, "Shrubs", "ground", "Low open shrubland"
, 10, 0.5, "Shrubs", "ground", "Low very open shrubland"
, 100, 1, "Mat plants", "mid", "Tall closed mat plants"
, 70, 1, "Mat plants", "mid", "Tall mat plants"
, 30, 1, "Mat plants", "mid", "Tall open mat plants"
, 10, 1, "Mat plants", "mid", "Tall very open mat plants"
, 100, 1, "Hummock grasses", "hummock", "Tall closed hummock grassland"
, 70, 1, "Hummock grasses", "hummock", "Tall hummock grassland"
, 30, 1, "Hummock grasses", "hummock", "Tall open hummock grassland"
, 10, 1, "Hummock grasses", "hummock", "Tall very open hummock grassland"
, 100, 1, "Grasses", "mid", "Tall closed grassland"
, 70, 1, "Grasses", "mid", "Tall grassland"
, 30, 1, "Grasses", "mid", "Tall open grassland"
, 10, 1, "Grasses", "mid", "Tall very open grassland"
, 100, 1, "Sedges", "mid", "Tall closed grassland"
, 70, 1, "Sedges", "mid", "Tall grassland"
, 30, 1, "Sedges", "mid", "Tall open grassland"
, 10, 1, "Sedges", "mid", "Tall very open grassland"
, 100, 1, "Forbs", "mid", "Tall closed grassland"
, 70, 1, "Forbs", "mid", "Tall grassland"
, 30, 1, "Forbs", "mid", "Tall open grassland"
, 10, 1, "Forbs", "mid", "Tall very open grassland"
, 100, 1, "Ferns", "fern", "Tall closed fernland"
, 70, 1, "Ferns", "fern", "Tall fernland"
, 30, 1, "Ferns", "fern", "Tall open fernland"
, 10, 1, "Ferns", "fern", "Tall very open fernland"
, 100, 1, "Mistletoe", "mistletoe", "Closed mistletoe"
, 70, 1, "Mistletoe", "mistletoe", "Mistletoe"
, 30, 1, "Mistletoe", "mistletoe", "Open mistletoe"
, 10, 1, "Mistletoe", "mistletoe", "Very open mistletoe"
, 100, 0.5, "Mat plants", "mat", "Closed matplants"
, 70, 0.5, "Mat plants", "mat", "Matplants"
, 30, 0.5, "Mat plants", "mat", "Open matplants"
, 10, 0.5, "Mat plants", "mat", "Very open matplants"
, 100, 0.5, "Hummock grasses", "hummock", "Closed hummock grassland"
, 70, 0.5, "Hummock grasses", "hummock", "Hummock grassland"
, 30, 0.5, "Hummock grasses", "hummock", "Open hummock grassland"
, 10, 0.5, "Hummock grasses", "hummock", "Very open hummock grassland"
, 100, 0.5, "Grasses", "ground", "Closed grassland"
, 70, 0.5, "Grasses", "ground", "Grassland"
, 30, 0.5, "Grasses", "ground", "Open grassland"
, 10, 0.5, "Grasses", "ground", "Very open grassland"
, 100, 0.5, "Sedges", "ground", "Closed grassland"
, 70, 0.5, "Sedges", "ground", "Grassland"
, 30, 0.5, "Sedges", "ground", "Open grassland"
, 10, 0.5, "Sedges", "ground", "Very open grassland"
, 100, 0.5, "Forbs", "ground", "Closed grassland"
, 70, 0.5, "Forbs", "ground", "Grassland"
, 30, 0.5, "Forbs", "ground", "Open grassland"
, 10, 0.5, "Forbs", "ground", "Very open grassland"
, 100, 0.5, "Ferns", "fern", "Closed fernland"
, 70, 0.5, "Ferns", "fern", "Fernland"
, 30, 0.5, "Ferns", "fern", "Open fernland"
, 10, 0.5, "Ferns", "fern", "Very open fernland"
, 100, 0.5, "Mistletoe", "mistletoe", "Closed mistletoe"
, 70, 0.5, "Mistletoe", "mistletoe", "Mistletoe"
, 30, 0.5, "Mistletoe", "mistletoe", "Open mistletoe"
, 10, 0.5, "Mistletoe", "mistletoe", "Very open mistletoe"
) %>%
dplyr::mutate(cov_thresh = dplyr::if_else(cov_thresh == 100,200,cov_thresh)
, cov_class = cut(cov_thresh
, breaks = c(unique(cov_thresh),5)
)
, ht_class = cut(ht_thresh
, breaks = c(unique(ht_thresh),0)
)
, storey = factor(storey
, levels = levels(lulifeform$storey)
, ordered = TRUE
)
) %>%
dplyr::select(storey,str,cov_class,ht_class,sa_vsf)
sa_sf <-tibble::tribble(
~sf, ~colour, ~order
, "forest", "forestgreen", 5
, "grassland", "yellow", 1
, "mallee", "orange3", 3
, "shrubland", "darkorchid4", 2
, "woodland", "darkolivegreen3", 4
, "wetland", "mediumseagreen", 7
, "samphire", "black", 8
, "fernland", "darkgreen", 6
, "matplants", "firebrick3", 2
) %>%
dplyr::mutate(sf = forcats::fct_reorder(sf,order))
taxa_samphire <- c("Salicornia"
, "Tecticornia"
)
taxa_wetland <- c("Phragmites"
, "Typha"
, "Juncus"
, "Eragrostis australasica" # Specht Veg of SA
, "Cressa australis" # Specht Veg of SA
, "Eragrostis dielsii" # Specht Veg of SA
, "Atriplex spongiosa" # Specht Veg of SA
, "Marsilea" # Specht Veg of SA
, "Duma" # Specht Veg of SA
, "Chenopodium nitrariaceum" # Specht Veg of SA
, "Chenopodium auricomum" # Specht Veg of SA
, "Cyperus laevigatus"
, "Cyperus gymnocaulos"
, "Sporobolus virginicus"
, "Sporobolus mitchellii"
, "Sphaeromorphaea littoralis"
, "Acacia stenophylla"
)
Acanthiza/envEcosystems documentation built on May 21, 2024, 6:20 p.m.
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library(magrittr)
cut_cov <- tibble::tribble(
~cov_thresh, ~pfc
, 200, "Extra dense"
, 70, "Dense"
, 30, "Mid-dense"
, 10, "Sparse"
, 5, "Very sparse"
)
cut_ht <- tibble::tribble(
~ht_thresh
, 200
, 30
, 10
, 5
, 3
, 2
, 1
, 0.5
, 0
)
sa_vsf <- tibble::tribble(
~cov_thresh, ~ht_thresh, ~str, ~storey, ~sa_vsf
, 100, 200, "Trees", "over", "Tall closed forest"
, 70, 200, "Trees", "over", "Tall open forest"
, 30, 200, "Trees", "over", "Tall woodland"
, 10, 200, "Trees", "over", "Tall open woodland"
, 100, 30, "Trees", "over", "Closed forest"
, 70, 30, "Trees", "over", "Open forest"
, 30, 30, "Trees", "over", "Woodland"
, 10, 30, "Trees", "over", "Open woodland"
, 100, 10, "Trees", "over", "Low closed forest"
, 70, 10, "Trees", "over", "Low open forest"
, 30, 10, "Trees", "over", "Low woodland"
, 10, 10, "Trees", "over", "Low open woodland"
, 100, 5, "Trees", "over", "Very low closed forest"
, 70, 5, "Trees", "over", "Very low open forest"
, 30, 5, "Trees", "over", "Very low woodland"
, 10, 5, "Trees", "over", "Very low open woodland"
, 100, 3, "Trees", "over", "Very low closed forest"
, 70, 3, "Trees", "over", "Very low open forest"
, 30, 3, "Trees", "over", "Very low woodland"
, 10, 3, "Trees", "over", "Very low open woodland"
, 100, 2, "Trees", "over", "Very low closed forest"
, 70, 2, "Trees", "over", "Very low open forest"
, 30, 2, "Trees", "over", "Very low woodland"
, 10, 2, "Trees", "over", "Very low open woodland"
#, 100, 10, "Mallees", "over", "Tall closed mallee"
#, 70, 10, "Mallees", "over", "Tall mallee"
#, 30, 10, "Mallees", "over", "Tall open mallee"
#, 10, 10, "Mallees", "over", "Tall very open mallee"
, 100, 5, "Mallees", "over", "Closed mallee"
, 70, 5, "Mallees", "over", "Mallee"
, 30, 5, "Mallees", "over", "Open mallee"
, 10, 5, "Mallees", "over", "Very open mallee"
, 100, 3, "Mallees", "over", "Closed low mallee"
, 70, 3, "Mallees", "over", "Low mallee"
, 30, 3, "Mallees", "over", "Open low mallee"
, 10, 3, "Mallees", "over", "Very open low mallee"
, 100, 2, "Mallees", "over", "Closed low mallee"
, 70, 2, "Mallees", "over", "Low mallee"
, 30, 2, "Mallees", "over", "Open low mallee"
, 10, 2, "Mallees", "over", "Very open low mallee"
, 100, 1, "Mallees", "over", "Closed low mallee"
, 70, 1, "Mallees", "over", "Low mallee"
, 30, 1, "Mallees", "over", "Open low mallee"
, 10, 1, "Mallees", "over", "Very open low mallee"
, 100, 3, "Shrubs", "mid", "Tall closed shrubland"
, 70, 3, "Shrubs", "mid", "Tall shrubland"
, 30, 3, "Shrubs", "mid", "Tall open shrubland"
, 10, 3, "Shrubs", "mid", "Tall very open shrubland"
, 100, 2, "Shrubs", "mid", "Closed shrubland"
, 70, 2, "Shrubs", "mid", "Shrubland"
, 30, 2, "Shrubs", "mid", "Open shrubland"
, 10, 2, "Shrubs", "mid", "Very open shrubland"
, 100, 1, "Shrubs", "mid", "Low closed shrubland"
, 70, 1, "Shrubs", "mid", "Low shrubland"
, 30, 1, "Shrubs", "mid", "Low open shrubland"
, 10, 1, "Shrubs", "mid", "Low very open shrubland"
, 100, 0.5, "Shrubs", "ground", "Low closed shrubland"
, 70, 0.5, "Shrubs", "ground", "Low shrubland"
, 30, 0.5, "Shrubs", "ground", "Low open shrubland"
, 10, 0.5, "Shrubs", "ground", "Low very open shrubland"
, 100, 1, "Mat plants", "mid", "Tall closed mat plants"
, 70, 1, "Mat plants", "mid", "Tall mat plants"
, 30, 1, "Mat plants", "mid", "Tall open mat plants"
, 10, 1, "Mat plants", "mid", "Tall very open mat plants"
, 100, 1, "Hummock grasses", "hummock", "Tall closed hummock grassland"
, 70, 1, "Hummock grasses", "hummock", "Tall hummock grassland"
, 30, 1, "Hummock grasses", "hummock", "Tall open hummock grassland"
, 10, 1, "Hummock grasses", "hummock", "Tall very open hummock grassland"
, 100, 1, "Grasses", "mid", "Tall closed grassland"
, 70, 1, "Grasses", "mid", "Tall grassland"
, 30, 1, "Grasses", "mid", "Tall open grassland"
, 10, 1, "Grasses", "mid", "Tall very open grassland"
, 100, 1, "Sedges", "mid", "Tall closed grassland"
, 70, 1, "Sedges", "mid", "Tall grassland"
, 30, 1, "Sedges", "mid", "Tall open grassland"
, 10, 1, "Sedges", "mid", "Tall very open grassland"
, 100, 1, "Forbs", "mid", "Tall closed grassland"
, 70, 1, "Forbs", "mid", "Tall grassland"
, 30, 1, "Forbs", "mid", "Tall open grassland"
, 10, 1, "Forbs", "mid", "Tall very open grassland"
, 100, 1, "Ferns", "fern", "Tall closed fernland"
, 70, 1, "Ferns", "fern", "Tall fernland"
, 30, 1, "Ferns", "fern", "Tall open fernland"
, 10, 1, "Ferns", "fern", "Tall very open fernland"
, 100, 1, "Mistletoe", "mistletoe", "Closed mistletoe"
, 70, 1, "Mistletoe", "mistletoe", "Mistletoe"
, 30, 1, "Mistletoe", "mistletoe", "Open mistletoe"
, 10, 1, "Mistletoe", "mistletoe", "Very open mistletoe"
, 100, 0.5, "Mat plants", "mat", "Closed matplants"
, 70, 0.5, "Mat plants", "mat", "Matplants"
, 30, 0.5, "Mat plants", "mat", "Open matplants"
, 10, 0.5, "Mat plants", "mat", "Very open matplants"
, 100, 0.5, "Hummock grasses", "hummock", "Closed hummock grassland"
, 70, 0.5, "Hummock grasses", "hummock", "Hummock grassland"
, 30, 0.5, "Hummock grasses", "hummock", "Open hummock grassland"
, 10, 0.5, "Hummock grasses", "hummock", "Very open hummock grassland"
, 100, 0.5, "Grasses", "ground", "Closed grassland"
, 70, 0.5, "Grasses", "ground", "Grassland"
, 30, 0.5, "Grasses", "ground", "Open grassland"
, 10, 0.5, "Grasses", "ground", "Very open grassland"
, 100, 0.5, "Sedges", "ground", "Closed grassland"
, 70, 0.5, "Sedges", "ground", "Grassland"
, 30, 0.5, "Sedges", "ground", "Open grassland"
, 10, 0.5, "Sedges", "ground", "Very open grassland"
, 100, 0.5, "Forbs", "ground", "Closed grassland"
, 70, 0.5, "Forbs", "ground", "Grassland"
, 30, 0.5, "Forbs", "ground", "Open grassland"
, 10, 0.5, "Forbs", "ground", "Very open grassland"
, 100, 0.5, "Ferns", "fern", "Closed fernland"
, 70, 0.5, "Ferns", "fern", "Fernland"
, 30, 0.5, "Ferns", "fern", "Open fernland"
, 10, 0.5, "Ferns", "fern", "Very open fernland"
, 100, 0.5, "Mistletoe", "mistletoe", "Closed mistletoe"
, 70, 0.5, "Mistletoe", "mistletoe", "Mistletoe"
, 30, 0.5, "Mistletoe", "mistletoe", "Open mistletoe"
, 10, 0.5, "Mistletoe", "mistletoe", "Very open mistletoe"
) %>%
dplyr::mutate(cov_thresh = dplyr::if_else(cov_thresh == 100,200,cov_thresh)
, cov_class = cut(cov_thresh
, breaks = c(unique(cov_thresh),5)
)
, ht_class = cut(ht_thresh
, breaks = c(unique(ht_thresh),0)
)
, storey = factor(storey
, levels = levels(lulifeform$storey)
, ordered = TRUE
)
) %>%
dplyr::select(storey,str,cov_class,ht_class,sa_vsf)
sa_sf <-tibble::tribble(
~sf, ~colour, ~order
, "forest", "forestgreen", 5
, "grassland", "yellow", 1
, "mallee", "orange3", 3
, "shrubland", "darkorchid4", 2
, "woodland", "darkolivegreen3", 4
, "wetland", "mediumseagreen", 7
, "samphire", "black", 8
, "fernland", "darkgreen", 6
, "matplants", "firebrick3", 2
) %>%
dplyr::mutate(sf = forcats::fct_reorder(sf,order))
taxa_samphire <- c("Salicornia"
, "Tecticornia"
)
taxa_wetland <- c("Phragmites"
, "Typha"
, "Juncus"
, "Eragrostis australasica" # Specht Veg of SA
, "Cressa australis" # Specht Veg of SA
, "Eragrostis dielsii" # Specht Veg of SA
, "Atriplex spongiosa" # Specht Veg of SA
, "Marsilea" # Specht Veg of SA
, "Duma" # Specht Veg of SA
, "Chenopodium nitrariaceum" # Specht Veg of SA
, "Chenopodium auricomum" # Specht Veg of SA
, "Cyperus laevigatus"
, "Cyperus gymnocaulos"
, "Sporobolus virginicus"
, "Sporobolus mitchellii"
, "Sphaeromorphaea littoralis"
, "Acacia stenophylla"
)
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