Man pages for AdamCottrill/glfishr
Fetch fisheries assessment data from the FN Portal
| add_missing_fn012 | Add FN012 record for missing SPC-GRPs |
| add_special_filters | Add special filter options to selected endpoints |
| api_to_dataframe | Given a url submit the request and return the results as a... |
| append_data | Append data-frame to Access table |
| assign_fn012_sizesam | Populate FN012.SIZSAM based |
| augment_fn012 | Augment the FN012 data |
| build_query_string | Given a list of filters return a url query string |
| check_filters | Check the filters against api filters |
| download_pt_files | download_pt_files - Download reports or associated files from... |
| fetch_fn012_protocol_data | Fetch FN012 data for lake-protocols |
| fetching_report | Report fetching activity to the console |
| fetch_pt_associated_files | fetch_pt_associated_files - Project Tracker Reports |
| fetch_pt_reports | fetch_pt_reports - Project Tracker Reports |
| fetch_sc012_protocol_data | Fetch SC012 data for a lake |
| fetch_tfat_lookups | Fetch the values from the tfat lookup api endpoint |
| fill_missing_fn012_limits | Fill missing FN012 size limits |
| get_ageprep1 | Get age preparation 1 options - A list of age preparation 1... |
| get_ageprep2 | Get age preparation 2 options - A list of age preparation 2... |
| get_agest | Get aging structure options - A list of aging structure codes... |
| get_Angler_Answers | Get Angler Answers from Creel Portal API |
| get_Angler_Questions | Get Angler Questions from Creel Portal API |
| get_api_filters | Create global list of available API filters |
| get_assessment_data | connect the api and get data from assessment portal |
| get_bottom_types | Get bottom types - A list of bottom types used in GLIS |
| get_clip_codes | Get clip code options - A list of clip codes used in GLIS |
| get_common_portal_root | Internal function to url to the common api. |
| get_cover_types | Get cover types - A list of cover types used in GLIS |
| get_credentials | Get GLIS Credentials |
| get_creel_data | connect the api and get data from the creel portal |
| get_domain | Internal func to get the domain for the GLIS api's |
| get_fisheries_offices | Get fisheries office options - A list of fisheries office... |
| get_flen2tlen | Get FLEN~TLEN regression coefficients GLIS API |
| get_FN011 | Get FN011 - Project meta data from FN_Portal API |
| get_FN012 | Get FN012 - Sampling specs (species and group) from FN_Portal... |
| get_FN012_Protocol | Get FN012_Protocol - Sampling specs (species and group) for a... |
| get_FN013 | Get FN013 - Gear Description Data FN_Portal API |
| get_FN022 | Get FN022 - Season Strata Data FN_Portal API |
| get_FN026 | Get FN026 - Spatial Strata Data FN_Portal API |
| get_FN026_Subspace | Get FN026_subspace - Spatial Strata Data FN_Portal API |
| get_FN028 | Get FN028 - Fishing Modes from FN_Portal API |
| get_FN121 | Get FN121 - Net set data from FN_Portal API |
| get_FN121_Electrofishing | Get FN121_Electrofishing - Electrofishing data from FN_Portal... |
| get_FN121_GPS_Tracks | Get FN121_GPS - GPS data from FN_Portal API |
| get_FN121_Limno | Get FN121_Limno - Net set limnological data from FN_Portal... |
| get_FN121_Trapnet | Get FN121_Trapnet - Trapnet data from FN_Portal API |
| get_FN121_Trawl | Get FN121_Trawl - Trawl data from FN_Portal API |
| get_FN121_Weather | Get FN121_Weather - Weather data from FN_Portal API |
| get_FN122 | Get FN122 - Effort data from FN_Portal API |
| get_FN123 | Get FN123 - Catch Counts from FN_Portal API |
| get_FN123_NonFish | Get FN123_NonFish - Catch Counts of Non-Fish species from... |
| get_FN124 | Get FN124 - Length Frequency Counts from FN_Portal API |
| get_FN125 | Get FN125 - Biological data from FN_Portal API |
| get_FN125_Lamprey | Get FN125_Lam - Lamprey Wound data from FN_Portal API |
| get_FN125_Tags | Get FN125_Tags - Tagging data from FN_Portal API |
| get_FN126 | Get FN126 - Diet data from FN_Portal API |
| get_FN127 | Get FN127 - Age data from FN_Portal API |
| get_fn_portal_root | Internal function to url to the FN_Portal api. |
| get_gear | Get Gear List from the FN_Portal API |
| get_gear_process_types | Get Gear Effort Process Types from the FN_Portal API |
| get_grid5s | Get 5-minute grids - A list of 5-minute grids for the Great... |
| get_grid5s_from_points | Get 5-minute grids from an array of points |
| get_gruse | Get gear use options - A list of gear use codes used in GLIS |
| get_lakes | Get lakes - A list of lake names and abbreviations used in... |
| get_management_units | Get management units - A list of management units in GLIS |
| get_mu_list | Get list of lake management unit types from GLIS API |
| get_orientations | Get orientation options - A list of orientation codes used in... |
| get_prj_leads | Get project leads - A list of project leads used in GLIS |
| get_project_leads | Get project leads - A list of project leads used in GLIS |
| get_project_types | Get project type options - A list of project type codes used... |
| get_pt_abstracts | get_pt_abstracts - Project Tracker Abstracts |
| get_pt_associated_files | get_pt_associated_files - Project Tracker Associated Files |
| get_pt_nr_milestones | get_pt_nr_milestones - Project Tracker Non-report Milestones |
| get_pt_points | get_pt_points - Project Tracker Points |
| get_pt_portal_root | Internal function to url to the PT_Portal api. |
| get_pt_projects | get_pt_projects - Project Tracker Projects |
| get_pt_reports | get_pt_reports - Project Tracker Reports |
| get_SC011 | Get SC011 - Creel Project Metadata from Creel Portal API |
| get_SC012 | Get SC012 - Sampling specs (species and group) from Creel... |
| get_SC012_Lake | Get FN012_Lake - Sampling specs (species and group) for a... |
| get_SC012_Protocol | Get SC012_Protocol - Creel Sampling specs (species and group)... |
| get_SC022 | Get SC022 - Season Strata Data from Creel_Portal API |
| get_SC023 | Get SC023 - Day Type Data Creel_Portal API |
| get_SC024 | Get SC024 - Period Type Data Creel_Portal API |
| get_SC025 | Get SC025 - Exception Dates from Creel_Portal API |
| get_SC026 | Get SC026 - Spatial Strata Data Creel_Portal API |
| get_SC026_Subspace | Get SC026_Subspace - Spatial Strata Data Creel_Portal API |
| get_SC028 | Get SC028 - Fishing Modes from Creel_Portal API |
| get_SC111 | Get SC111 - Creel Interview Logs from Creel_Portal API |
| get_SC112 | Get SC112 - Creel Activity Counts from Creel_Portal API |
| get_SC121 | Get SC121 - Angler Interviews from Creel_Portal API |
| get_SC123 | Get SC123 - Catch Counts from Creel_Portal API |
| get_SC124 | Get SC124 - Length Frequency Counts from Creel_Portal API |
| get_SC125 | Get SC125 - Biological data from Creel_Portal API |
| get_SC125_Lamprey | Get SC125_Lamprey - Lamprey Wound data from Creel_Portal API |
| get_SC125_Tags | Get SC125_Tags - Tagging data from SC_Portal API |
| get_SC126 | Get SC126 - Diet data from Creel_Portal API |
| get_SC127 | Get SC127 - Diet data from Creel_Portal API |
| get_sc_portal_root | Internal function to url to the SC_Portal api. |
| get_species | Get Species list data from Common API |
| get_Stream_Dimensions | Get Stream Dimensions data from FN_Portal API |
| get_swagger_url | Build the url to fetch the swagger data for a give app |
| get_tag_agencies | Get tagging agency options - A list of tagging agency codes... |
| get_tag_attr_values | Get the list of values for tag attributes from the TFAT api |
| get_tag_colours | Get tag colour options - A list of tag colour codes used in... |
| get_tag_positions | Get tag position options - A list of tag position codes used... |
| get_tag_types | Get tag types - A list of tag types used in GLIS |
| get_taxon_table | Get taxon table - A list of fish and non-fish species and... |
| get_tfat_encounters | Get TFAT Tag Encounters |
| get_tfat_projects | Get TFAT Tagging Projects |
| get_tfat_recoveries | Get TFAT Tag Recoveries |
| get_tfat_reporters | Get TFAT Tag Reporters |
| get_tfat_reports | Get TFAT Tag Recovery Reports |
| get_tfat_root | Internal function to url to the tfat api. |
| get_tissues | Get tissues - A list of tissue types used in GLIS |
| get_token | Get GLIS API token |
| get_trg_table_names | Get field names for target table |
| get_vessels | Get vessels - A list of vessel names used in GLIS |
| join_fn_fields | Perform transformations to api payload before return data... |
| parse_swagger_payload | Convert swagger response into named list |
| pluck_dataframe | Pluck a data-frame from a named list of key-value pairs |
| populate_db | Populate target database |
| populate_fn012 | Populate the FN012-Sampling Specs Table |
| populate_gept | Populate Gear-Effort-Process-Type from FN028 and FN121 tables |
| populate_template | Populate a GLIS template using the GLIS API |
| prepare_payload | Perform transformations to api payload before return data... |
| prune_unused_fn012 | Remove FN012 records without matching FN123 records |
| refresh_filters | Refresh the global api filter list |
| show_filters | Show filters available on the provided api endpoint |
| sync_flds | Synchornize fields in dataframe to match a database table |
| uncount_tally | Uncount Tallies |
| validate_glis_data | Check data returned from api before inserting into template |
