LB_obj-class: An S4 class containing all parameters for the LBSPR model

Description Slots

Description

An S4 class containing all parameters for the LBSPR model

Slots

SPR

The Spawning Potential Ratio

Yield

Relative yield

YPR

Yield per recruit

SSB

Spawning stock biomass (relative only)

SSB0

Unfished spawning stock biomass

B0

Unfished biomass

LMids

A numeric vector containing the mid-points of the length bins

pLCatch

A numeric vector containg expected proportion for each length class in the catch

pLPop

A numeric vector containg expected proportion for each length class in the population

RelRec

Relative recruitment

Ests

A matrix of estimated values

Vars

A vector of estimated variance for SL50, SL95, F/M and SPR

NLL

A numeric NLL values

maxFM

A numeric of maximum estimated F/M value (note this is apical F)

SPRatsize

A vector of cumulative SPR at length (currently only works for GTG model)

fitLog

A vector of error logs for each fit. 0 means everything is okay.


AdrianHordyk/LBSPR documentation built on Jan. 13, 2020, 1:28 p.m.