auto_anno: Generate annotations from data

In AhmedMehdiLab/E.PAGE: Environmental Pathways Affecting Gene Expression

Generate annotations from data

Description

Generate annotations from data

Usage

auto_anno(data, mode, limit_universe = FALSE, save = NULL)

Arguments

data	E.PATH::database or output of import_database
mode	"GO", "KEGG" or "MeSH"
limit_universe	limit universe to genes contained in data
save	optional: path to save annotations as .csv

Value

tibble: raw annotations

Examples

data_path <- system.file("extdata/ex_data.csv", package="E.PAGE")
data <- import_database(data_path, ",", FALSE, c(2, 4), 0)

auto_anno(data, "GO")

AhmedMehdiLab/E.PAGE documentation built on Aug. 21, 2022, 4:37 p.m.