explore_annotation: Find an annotation's associated gene sets and genes
In AhmedMehdiLab/E.PAGE: Environmental Pathways Affecting Gene Expression

explore_annotation

R Documentation

Find an annotation's associated gene sets and genes

Description

Find an annotation's associated gene sets and genes

Usage

explore_annotation(annotation, gs_annos, gs_genes, genes = NULL)

Arguments

`annotation`	annotation to explore
`gs_annos`	value from `process_annotations`
`gs_genes`	value from `process_database`
`genes`	optional: genes to match, or (default) all

Value

"names" vector: gene set names

"genes" vector: genes

Examples

## Not run: 
anno <- E.PATH::annotations
data <- E.PATH::database

anno_assoc <- explore_annotation("Carcinogen", anno$gs_annos, data$gs_genes)

## End(Not run)

AhmedMehdiLab/E.PAGE documentation built on Aug. 21, 2022, 4:37 p.m.