calculate_pre: Begin calculating overlap statistics
In AhmedMehdiLab/E.PAGE: Environmental Pathways Affecting Gene Expression

calculate_pre

R Documentation

Begin calculating overlap statistics

Description

Begin calculating overlap statistics

Usage

calculate_pre(input, annos, gs_annos, gs_genes)

Arguments

`input`	output of `process_input_text` or `process_input_seurat`
`annos`	value from `process_annotations`
`gs_annos`	value from `process_annotations`
`gs_genes`	value from `process_database`

Value

stats_pre tibble: overlap statistics (incomplete)

matches list: names: annotations vector: matched genes

Examples

## Not run: 
anno <- E.PATH::annotations
data <- E.PATH::database

input <- process_input_text("FCN1 0.1 FTL 0.8 CLU 0.05")
calc_pre <- calculate_pre(input, anno$annos, anno$gs_annos, data$gs_genes)

## End(Not run)

AhmedMehdiLab/E.PAGE documentation built on Aug. 21, 2022, 4:37 p.m.