Man pages for Albluca/ElPiGraph.R
Elastic principal graph construction

accuracyComplexityPlotAccuracy-Complexity plot
AddNode2NodeAdds a node to each graph node
AdjustByConstantAdjust elastic matrix by dividing the values of lambda and mu...
ApplyOptimalGraphGrammarOpeationApplication of the grammar operation. This in an internal...
BranchingDimensionProduce a multidimensional dimension matrix
circle_dataPoints on a circle
CollapseBrancesFilter "small" branches
CollapseCliquesFilter cliques
CompareOnBranchesCompare feature values over different branches
computeElasticPrincipalCircleConscruct a princial elastic circle
computeElasticPrincipalCurveConstruct a princial elastic curve
computeElasticPrincipalGraphRegularize data and construct a principal elastic graph
computeElasticPrincipalGraphWithGrammarsConscruct a princial graph with the specified grammar
computeElasticPrincipalTreeConscruct a princial elastic tree
ComputeRelativeChangeOfNodePositionsEstimates the relative difference between two node...
ComputeSpringLaplacianMatrixCompute the Laplacian matrix
ConstructGraphGenerate an igraph object from a ElPiGraph structure
curve_dataPoints on a curve
DecodeElasticMatrixConverts ElasticMatrix into a set of edges and vectors of...
DistanceOnGraphCompute "on the graph" distance
EdgeCatAssociationTitle
ElPrincGraphCore function to construct a principal elestic graph
Encode2ElasticMatrixCreate an Elastic matrix from a set of edges
ExploreNeiInteractivelly look at data
ExtendLeavesExtend leaves with additional nodes
FindAssocitedFind the points associted with the final ElPiGraph structure
fineTuneBRExpand the nodes around a branching point
generateInitialConfigurationProduce an initial graph with a given structure
GenertateConsensusGraphObtain a consens tree from bootstrapped data
GetBranchesReturn a data frame summarizing the branching structure
getPrimitiveGraphStructureBarCodeTitle
GetProjectionUncertaintyCompute projection-associted uncertainty
getPseudotimeCompute the pseudotime associted with a path
GetSubGraphExtract a subgraph with a given topology from a graph
GrowLeavesExtend the leaves of a graph
GrowPathGrow a branching path using walkers
helloHello, World!
InferTrimRadiusTitle
InizializeWalkersInitialize a group of 'walkers'
MakeUniformElasticMatrixCreate a uniform elastic matrix from a set of edges
MeasureSmoothnessMeasure smoothness of the differnt feature of the data
PartitionDataAssign data points to a set of nodes
plotMSDEnergyPlotPlot the MSD VS Energy plot
PlotPGPlot data and principal graph(s)
plotPieNetPlot a graph with pie chart associated with each node
PlotShinyAuxiliary function used by the shiny interface
PrimitiveElasticGraphEmbedmentFunction fitting a primitive elastic graph to the data
project_point_onto_edgeTitle
project_point_onto_graphProject data points on the precipal graph
RearrangePlotInteractivelly modify data
RemoveNodesbyIDsTitle
ReportOnPrimitiveGraphEmbedmentTitle
ShiftBranchingMove branching nodes to areas with higher point density
tree_dataPoints on a tree
Albluca/ElPiGraph.R documentation built on June 10, 2018, 5:22 p.m.