accuracyComplexityPlot | Accuracy-Complexity plot |
AddNode2Node | Adds a node to each graph node |
AdjustByConstant | Adjust elastic matrix by dividing the values of lambda and mu... |
ApplyOptimalGraphGrammarOpeation | Application of the grammar operation. This in an internal... |
BranchingDimension | Produce a multidimensional dimension matrix |
circle_data | Points on a circle |
CollapseBrances | Filter "small" branches |
CollapseCliques | Filter cliques |
CompareOnBranches | Compare feature values over different branches |
computeElasticPrincipalCircle | Conscruct a princial elastic circle |
computeElasticPrincipalCurve | Construct a princial elastic curve |
computeElasticPrincipalGraph | Regularize data and construct a principal elastic graph |
computeElasticPrincipalGraphWithGrammars | Conscruct a princial graph with the specified grammar |
computeElasticPrincipalTree | Conscruct a princial elastic tree |
ComputeRelativeChangeOfNodePositions | Estimates the relative difference between two node... |
ComputeSpringLaplacianMatrix | Compute the Laplacian matrix |
ConstructGraph | Generate an igraph object from a ElPiGraph structure |
curve_data | Points on a curve |
DecodeElasticMatrix | Converts ElasticMatrix into a set of edges and vectors of... |
DistanceOnGraph | Compute "on the graph" distance |
EdgeCatAssociation | Title |
ElPrincGraph | Core function to construct a principal elestic graph |
Encode2ElasticMatrix | Create an Elastic matrix from a set of edges |
ExploreNei | Interactivelly look at data |
ExtendLeaves | Extend leaves with additional nodes |
FindAssocited | Find the points associted with the final ElPiGraph structure |
fineTuneBR | Expand the nodes around a branching point |
generateInitialConfiguration | Produce an initial graph with a given structure |
GenertateConsensusGraph | Obtain a consens tree from bootstrapped data |
GetBranches | Return a data frame summarizing the branching structure |
getPrimitiveGraphStructureBarCode | Title |
GetProjectionUncertainty | Compute projection-associted uncertainty |
getPseudotime | Compute the pseudotime associted with a path |
GetSubGraph | Extract a subgraph with a given topology from a graph |
GrowLeaves | Extend the leaves of a graph |
GrowPath | Grow a branching path using walkers |
hello | Hello, World! |
InferTrimRadius | Title |
InizializeWalkers | Initialize a group of 'walkers' |
MakeUniformElasticMatrix | Create a uniform elastic matrix from a set of edges |
MeasureSmoothness | Measure smoothness of the differnt feature of the data |
PartitionData | Assign data points to a set of nodes |
plotMSDEnergyPlot | Plot the MSD VS Energy plot |
PlotPG | Plot data and principal graph(s) |
plotPieNet | Plot a graph with pie chart associated with each node |
PlotShiny | Auxiliary function used by the shiny interface |
PrimitiveElasticGraphEmbedment | Function fitting a primitive elastic graph to the data |
project_point_onto_edge | Title |
project_point_onto_graph | Project data points on the precipal graph |
RearrangePlot | Interactivelly modify data |
RemoveNodesbyIDs | Title |
ReportOnPrimitiveGraphEmbedment | Title |
ShiftBranching | Move branching nodes to areas with higher point density |
tree_data | Points on a tree |
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