GenertateConsensusGraph: Obtain a consens tree from bootstrapped data

In Albluca/ElPiGraph.R: Elastic principal graph construction

Description

Obtain a consens tree from bootstrapped data

Usage

GenertateConsensusGraph(BootPG, Mode = "NodeDist", CollapseRadius = NULL,
  FilterEdges.Min = NULL, FilterEdges.Max = NULL, Clusters = 100,
  MinEdgMult = 2, MinNodeMult = 2, RemoveIsolatedNodes = TRUE,
  OnlyLCC = FALSE, PlotResult = TRUE)

Arguments

BootPG	list of ElPiGraph structures containing the bootstrapped data
Mode	string, the mode to use
CollapseRadius	numeric, the distance to use in order to compute the multiplicity of the nodes. If NULL, it will be inferred from the data
FilterEdges.Min	numeric, the minimal length of edges in the final graph. Shorter edges will be removed, unless the removal results in an increase of the components of the graph
FilterEdges.Max	numeric, the maximum length of edges in the final graph. Longer edges will be removed, unless the removal results in an increase of the components of the graph
Clusters	integer, the number of clusters inferred by the kmeans step
MinEdgMult	integer, minimal multiplicity of the edges of the consensus graph
MinNodeMult	integer, minimal multiplicity of the nodes of the consensus graph
RemoveIsolatedNodes	boolean, should the procedure remove graph nodes that are not connected to any other node?
OnlyLCC	boolean, should the procedure return only the largest connected component of the graph?
PlotResult	boolean, should debugging information be plotted?

Albluca/ElPiGraph.R documentation built on May 28, 2019, 11:02 a.m.