Alethere/SmoothDescent: Application of map-based genotype correction algorithm Smooth Descent

Map-based genotype correction algorithm that calculates Identity-by-descent probabilities based on 1) homologue assignment matrix (phased genotypes) and 2) a preliminary genetic map. Mapping is also implemented using R packages MDSmap and PolymapR, creating a map-building pipeline that can handle genotyping errors at any ploidy level. The smooth descent algorithm is based on SMOOTH (van Os et al. 2006) <doi:10.1007/s00122-005-0124-y>. A developer version of this package can be found on Github <https://github.com/Alethere/SmoothDescent>

install.packages("remotes")
remotes::install_github("Alethere/SmoothDescent")