reorder_tau: Reorder parameter calculator
In Alethere/SmoothDescent: Application of map-based genotype correction algorithm Smooth Descent
reorder_tau R Documentation
Reorder parameter calculator
Description
Given two maps with the same markers, calculates the
reordering parameter \tau between them. This is based on the
rank-correlation, or Kendall correlation.
Usage
reorder_tau(oldmap, newmap)
Arguments
oldmap
a data.frame containing at least "marker" and "position" columns.
newmap
a data.frame containing at least "marker" and "position" columns.
All marker names must be present in 'oldmap'.
Value
A single parameter indicating the rank order correlation.
Examples
data("iter_smooth_descent")
old <- sd_iter$iter1$oldmap
new <- sd_iter$iter1$newmap
reorder_tau(old,new)
Alethere/SmoothDescent documentation built on Oct. 21, 2023, 7:11 a.m.
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| reorder_tau | R Documentation |
Reorder parameter calculator
Description
Given two maps with the same markers, calculates the
reordering parameter \tau between them. This is based on the
rank-correlation, or Kendall correlation.
Usage
reorder_tau(oldmap, newmap)
Arguments
oldmap |
a data.frame containing at least "marker" and "position" columns. |
newmap |
a data.frame containing at least "marker" and "position" columns. All marker names must be present in 'oldmap'. |
Value
A single parameter indicating the rank order correlation.
Examples
data("iter_smooth_descent")
old <- sd_iter$iter1$oldmap
new <- sd_iter$iter1$newmap
reorder_tau(old,new)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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