calc_IBD | Calculation of IBD |
config | Configuration function |
extract | Extraction from list |
faster_IBD | Extremely fast estimation of identity-by-descent (IBD)... |
geno | Genotype matrix |
genotype | Genotype calculator |
graphical_genotype | Graphical genotype plotter |
hom | Homologue matrix |
iterplot | Plotting of map comparisons |
linkdf | Linkage data.frame |
linkdf_shortcut | Linkdf shortcut |
map | Map data.frame |
mdsmap | MDSmap caller |
naive_IBD | Calculation of IBD for a single data point |
predict_IBD | Predict IBD |
rec_count | Recombination counter |
recdist_calc | Recombination-distance plot calculator |
reorder_tau | Reorder parameter calculator |
r_from_dist | Reverse mapping function |
rowfuse | Matrix merging of rows with equal names |
sdescent | Smooth Descent output |
sd_iter | Smooth Descent iterations output |
smooth_descent | Smooth Descent wrapper |
smooth_map | Smooth Mapping |
smooth_map_iter | Iterative Smooth Mapping |
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