API for Alethere/SmoothDescent
Application of map-based genotype correction algorithm Smooth Descent
| Global functions | |
|---|---|
| calc_IBD | Man page Source code |
| config | Man page Source code |
| correct_to_sumScore | Source code |
| extract | Man page Source code |
| faster_IBD | Man page Source code |
| findNearest | Source code |
| geno | Man page |
| genotype | Man page Source code |
| genotype.list | Man page Source code |
| genotype.matrix | Man page Source code |
| graphical_genotype | Man page |
| graphical_genotype.list | Man page |
| graphical_genotype.matrix | Man page |
| group_informative | Source code |
| heur_IBD | Source code |
| heur_IBD.matrix | Source code |
| heur_IBD.numeric | Source code |
| hmm_IBD | Source code |
| hmm_IBD.matrix | Source code |
| hmm_IBD.numeric | Source code |
| hom | Man page |
| interval_expansion | Source code |
| iterplot | Man page Source code |
| linkdf | Man page |
| linkdf_shortcut | Man page Source code |
| map | Man page |
| mdsmap | Man page Source code |
| naive_IBD | Source code |
| naive_IBD.matrix | Man page Source code |
| naive_IBD.numeric | Man page Source code |
| per_homologue | Source code |
| predict_IBD | Man page Source code |
| predict_IBD.list | Man page Source code |
| predict_IBD.matrix | Man page Source code |
| predict_IBD.numeric | Man page Source code |
| r_from_dist | Man page Source code |
| rec_count | Man page Source code |
| rec_count.list | Man page Source code |
| rec_count.matrix | Man page Source code |
| recdist_calc | Man page Source code |
| recdist_plot | Man page Source code |
| reorder_tau | Man page Source code |
| rowfuse | Man page Source code |
| sd_iter | Man page |
| sdescent | Man page |
| simple_expansion | Source code |
| smooth_descent | Man page Source code |
| smooth_map | Man page Source code |
| smooth_map_iter | Man page Source code |
