Man pages for Alethere/SmoothDescent
Application of map-based genotype correction algorithm Smooth Descent
| calc_IBD | Calculation of IBD |
| config | Configuration function |
| extract | Extraction from list |
| faster_IBD | Extremely fast estimation of identity-by-descent (IBD)... |
| geno | Genotype matrix |
| genotype | Genotype calculator |
| graphical_genotype | Graphical genotype plotter |
| hom | Homologue matrix |
| iterplot | Plotting of map comparisons |
| linkdf | Linkage data.frame |
| linkdf_shortcut | Linkdf shortcut |
| map | Map data.frame |
| mdsmap | MDSmap caller |
| naive_IBD | Calculation of IBD for a single data point |
| predict_IBD | Predict IBD |
| rec_count | Recombination counter |
| recdist_calc | Recombination-distance plot calculator |
| reorder_tau | Reorder parameter calculator |
| r_from_dist | Reverse mapping function |
| rowfuse | Matrix merging of rows with equal names |
| sdescent | Smooth Descent output |
| sd_iter | Smooth Descent iterations output |
| smooth_descent | Smooth Descent wrapper |
| smooth_map | Smooth Mapping |
| smooth_map_iter | Iterative Smooth Mapping |
