Description Usage Arguments Value Author(s) References Examples

View source: R/NetworkToolbox--master.R

Filters the network based on an r-value, alpha, adaptive alpha (see Perez & Pericchi, 2014),
bonferroni, false-discovery rate (FDR, *fdrtool* package), or proportional density (fixed number of edges) value

1 2 3 |

`data` |
Can be a dataset or a correlation matrix |

`a` |
When thresh = "alpha", "adaptive", and "bonferroni" an alpha threshold is applied (defaults to |

`thresh` |
Sets threshold. Defaults to "alpha".
Set to any value 0> |

`n` |
Number of participants in sample.
Defaults to the number of rows in the data.
If input is a correlation matrix, then n |

`normal` |
Should data be transform to a normal distribution?
Defaults to FALSE. Data is not transformed to be normal.
Set to TRUE if data should be transformed to be normal
(computes correlations using the |

`na.data` |
How should missing data be handled?
For "pairwise" deletion |

Returns a list containing a filtered adjacency matrix (A) and the critical r value (r.cv)

Alexander Christensen <[email protected]>

Perez, M. E., & Pericchi, L. R. (2014).
Changing statistical significance with the amount of information: The adaptive *a* significance level.
*Statistics & Probability Letters*, *85*, 20-24.

Strimmer, K. (2008).
fdrtool: A versatile R package for estimating local and tail area-based false discovery rates.
*Bioinformatics*, *24*(12), 1461-1462.

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AlexChristensen/NetworkToolbox documentation built on Feb. 15, 2018, 10:12 p.m.

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