Man pages for AlexHelloWorld/DifferentialAndSurvivalAnalysis
| calculateFPKMMatrix | calculate FPKM from countTable and coldata |
| coxSurvivalAnalysis | Cox survival analysis |
| coxSurvivalAnalysisForGenes | Cox survival analysis for a list of genes |
| differentialAnalysis | differential analysis function based on DESeq2 |
| differentialAnalysisSingleAttribute | differential analysis function based on DESeq2 Do... |
| expressionCorrelation | calculate correlation of expression between a gene and a gene... |
| expressionCorrelationSingleGene | calculate correlation of expression between two genes |
| plotFPKMBoxplot | plot RPKM boxplot |
| plotHeatMap | plot heatmap with vsdData, differentialData |
| plotSurvivalAnalysis | plot survival curves |
| prepareTableForSurvivalAnalysis | Prepare table for survival analysis |
