Man pages for AlexHelloWorld/DifferentialAndSurvivalAnalysis

calculateFPKMMatrixcalculate FPKM from countTable and coldata
coxSurvivalAnalysisCox survival analysis
coxSurvivalAnalysisForGenesCox survival analysis for a list of genes
differentialAnalysisdifferential analysis function based on DESeq2
differentialAnalysisSingleAttributedifferential analysis function based on DESeq2 Do...
expressionCorrelationcalculate correlation of expression between a gene and a gene...
expressionCorrelationSingleGenecalculate correlation of expression between two genes
plotFPKMBoxplotplot RPKM boxplot
plotHeatMapplot heatmap with vsdData, differentialData
plotSurvivalAnalysisplot survival curves
prepareTableForSurvivalAnalysisPrepare table for survival analysis
AlexHelloWorld/DifferentialAndSurvivalAnalysis documentation built on Jan. 9, 2018, 12:38 a.m.