GSEAResult: Construct a GSEAResult Object

In AliSajid/BioPathNet: BioPathNet: Three Pod Analysis System

Construct a GSEAResult Object

Description

Construct a GSEAResult Object

Usage

GSEAResult(results, pathways, lower, upper, alpha, upreg, downreg, useFDR)

Arguments

results	tbl_df A tibble with the results from fgsea
pathways	list A list of vectors with gene sets
lower	numeric Lower threshold for down-regulated genes
upper	numeric Upper threshold for up-regulated genes
alpha	numeric Alpha level of significance
upreg	tbl_df A tibble of up-regulated genes
downreg	tbl_df A tibble of down-regulated genes
useFDR	logical Whether to filter by adjusted p-value

Value

an object of class GSEAResult

Examples

TRUE

AliSajid/BioPathNet documentation built on July 4, 2023, 6:40 a.m.