iLINCSResult-class: iLINCSResult-class: Class storing iLINCS Results

In AliSajid/BioPathNet: BioPathNet: Three Pod Analysis System

iLINCSResult-class: Class storing iLINCS Results

Description

This class stores the result of the results from iLINCS

Value

an object of class iLINCSResult

Slots

threshold_up

numeric. LFC threshold for up-regulated genes

threshold_down

numeric. LFC threshold for down-regulated genes

threshold_pval

numeric. P Value threshold for genes.

threshold_similarity

numeric. Similarity threshold

l1000_subset

tbl_df. Subset of L1000 genes in the dataset

upregulated_genes

tbl_df. L1000 genes up-regulatedd in dataset

downregulated_genes

tbl_df. L1000 genes down-regulated in dataset

ilincs_query_signature

tbl_df. Complete iLINCS Query signature

all_perturbagens

tbl_df. Complete list returned from iLINCS of perturbagens

filtered_perturbagens

tbl_df. Filtered list of perturbagens by the similarity threshold

num_genes_l1000

numeric. Number of L1000 genes in dataset

num_genes_upregulated

numeric. Number of up-regulated L1000 genes in dataset

num_genes_downregulated

numeric. Number of down-regulated L1000 genes in dataset

num_all_perturbagens

numeric. Number of all perturbagens returned by iLINCS

num_filtered_perturbagens

numeric. Number of filtered perturbagens returned by iLINCS

empty

logical. A simple check for whether or not the object is empty

Examples

TRUE

AliSajid/BioPathNet documentation built on July 4, 2023, 6:40 a.m.