do_enrichr_pod: Perform the EnrichR Analysis

In AliSajid/BioPathNet: BioPathNet: Three Pod Analysis System

Perform the EnrichR Analysis

Description

This function takes in a BPNList object and returns a BPNList object with the enrichr slot updated with process EnrichR Results

Usage

do_enrichr_pod(bpn, alpha = 0.05, lower = NULL, upper = NULL, useFDR = TRUE)

Arguments

bpn	BPNList An object of class BPNList created from prepare_data
alpha	numeric The Alpha value for statistical significance. Defaults to 0.05.
lower	numeric The cutoff for down-regulated genes. If not specified, it takes the bottom 10% of the
upper	numeric The cutoff for up-regulated genes. If not specified, it takes the top 10% of the dataset
useFDR	logical Whether to filter by adjusted p-value

Details

This function takes in a BPNList object and returns a BPNList object with the enrichr slot updated with process EnrichR Results.

Value

An object of class BPNList with its enrichr slot populated with the results

Examples

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AliSajid/BioPathNet documentation built on July 4, 2023, 6:40 a.m.