FindNeighbors: (From Seurat) FindNeighbors (required for Windows...

In AllenInstitute/L5_VEN:

(From Seurat) FindNeighbors (required for Windows compatibility)

Description

(From Seurat) FindNeighbors (required for Windows compatibility)

Usage

## S3 method for class 'Seurat'
FindNeighbors(object, reduction = "pca", dims = 1:10,
  assay = NULL, features = NULL, k.param = 20, compute.SNN = TRUE,
  prune.SNN = 1/15, nn.eps = 0, verbose = TRUE,
  force.recalc = FALSE, do.plot = FALSE, graph.name = NULL, ...)

Arguments

reduction	Reduction to use as input for building the SNN
dims	Dimensions of reduction to use as input
assay	Assay to use in construction of SNN
features	Features to use as input for building the SNN
do.plot	Plot SNN graph on tSNE coordinates
graph.name	Optional naming parameter for stored SNN graph. Default is assay.name_snn.

AllenInstitute/L5_VEN documentation built on July 31, 2022, 6:32 p.m.