renameClusters: Another function for renaming clusters based on data and...
In AllenInstitute/L5_VEN:
View source: R/other_functions.R
renameClusters R Documentation
Another function for renaming clusters based on data and meta-data
Description
See renameAndOrderClusters in library(scrattch.hicat)
Usage
renameClusters(sampleInfo, clusterInfo, propExpr, medianExpr,
propDiff = 0, propMin = 0.5, medianFC = 1, excludeGenes = NULL,
majorGenes = c("GAD1", "SLC17A7", "SLC1A3"),
majorLabels = majorGenes, broadGenes = majorGenes, propLayer = 0.3,
layerNameColumn = "layer_label", getLayer = function(x)
return(as.numeric(substr(as.character(x), 2, 2))))
AllenInstitute/L5_VEN documentation built on July 31, 2022, 6:32 p.m.
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View source: R/other_functions.R
| renameClusters | R Documentation |
Another function for renaming clusters based on data and meta-data
Description
See renameAndOrderClusters in library(scrattch.hicat)
Usage
renameClusters(sampleInfo, clusterInfo, propExpr, medianExpr,
propDiff = 0, propMin = 0.5, medianFC = 1, excludeGenes = NULL,
majorGenes = c("GAD1", "SLC17A7", "SLC1A3"),
majorLabels = majorGenes, broadGenes = majorGenes, propLayer = 0.3,
layerNameColumn = "layer_label", getLayer = function(x)
return(as.numeric(substr(as.character(x), 2, 2))))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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