compareClusterCalls: Compare two cluster sets matched to CCA. From...

In AllenInstitute/L5_VEN:

Compare two cluster sets matched to CCA. From library(patchseqtools)

Description

This function takes cluster calls defined in two different data sets and then determines to what extent these cluster calls match up with cluster calls from CCA.

Usage

compareClusterCalls(cl, ref.cl, cl.anno, plot.title = NA,
  plot.silent = TRUE, heat.colors = colorRampPalette(c("grey99",
  "orange", "red"))(100), fontsize = 6,
  row.cl.num = min(length(unique(cl)), length(unique(ref.cl))), ...)

Arguments

cl	a matrix (rows=genes x columns=samples) of gene expression data (e.g., scRNA-seq)
by.rows	By rows (TRUE; default) or by columns

Value

a reordered matrix

AllenInstitute/L5_VEN documentation built on July 31, 2022, 6:32 p.m.