species_expression_series_plot: species_expression_series_plot

Description Usage Arguments Value Examples

Description

Plot gene expression values for a time series of ages for human, non-human primate, mouse, and rat. Will only include data that is present in plots. This function requires the nhpdata package https://github.com/AllenInstitute/nhpdata

Usage

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species_expression_series_plot(
  Gene,
  col_map = rainbow,
  im_width = 10,
  im_height = 10,
  save_pdf = TRUE
)

Arguments

im_width

PDF image width

im_height

PDF image height

save_pdf

Save to disk or return to console

gene

Gene in the 'nhpdata::dev.expr2' data set; character string

colormap

Color pallete used to choose plot colors; default rainbow

Value

Creates a new plot of the gene in the current working directory

Examples

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# call on a given gene
species_expression_series_plot("EMX2")

# call on new gene with a different color map
species_expression_series_plot("DAD1", col_map = heat.colors))

AllenInstitute/atlasplot documentation built on Aug. 11, 2021, 1:52 a.m.