fet_brain_location_expression_plot: fet_brain_location_expression_plot

In AllenInstitute/atlasplot: Easy Plotting of the Allen Brain Altases

Description

Creates a matrix of brain images. Each column corresponds to a brain in the fetal human brain atlas, while each row is a specific brain layer. Each point shows gene expression for a particular cortical region in it's approximate anatomical centroid in the background brain image. Requires data from https://github.com/AllenInstitute/fetdata.

Usage

fet_brain_location_expression_plot(gene)

Arguments

gene	Gene in the 'fetdata::datFET' data set; character string

Value

Creates a new plot of the gene in the current working directory; label as 'GENE_fetalHuman_BrainLocationExpressionPlotsForEachLayer.pdf'

Examples

# call on a given gene
fet_expression2D_plot("SHH")

AllenInstitute/atlasplot documentation built on Aug. 11, 2021, 1:52 a.m.