Man pages for AllenSpike/CPDR
Cancer Drug Personalized Recommendation (CDPR)
| download_db | Download background data |
| draw_cor_map | Visualize drug effectiveness test result |
| drugcorTest | Evaluate drug effectiveness on relevant cell line |
| get_cell | Compute individual-related cell line |
| get_diff | Differential expression analysis |
| get_estimateScore | Evaluate non-cancer cell infiltration in each subtype |
| get_NMF | Implement transcriptome subtyping by NMF method |
| get_puretumor | Purify subgroup profiles |
| get_reverse_score | Compute sRGES |
| get_subgroup | Identify subgroup and control group for each clinical query... |
| select_db | Preprocess transcriptome profiling and filter TCGA samples |
