get_cell: Compute individual-related cell line
In AllenSpike/CPDR: Cancer Drug Personalized Recommendation (CDPR)
get_cell R Documentation
Compute individual-related cell line
Description
Compute individual-related cell line
Usage
get_cell(cmat, db.path = tempdir(), removeBatchEffect = TRUE, orgDB)
Arguments
cmat
The RNA-seq count expression profiles of clinical query samples.
db.path
A character(1) string with the folder path where the background data was saved.
removeBatchEffect
Remove batch effects from expression data using limma (TRUE by default).
orgDB
The human annotation db for ID convert.
Value
A cell line information list.
AllenSpike/CPDR documentation built on April 18, 2022, 4:38 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| get_cell | R Documentation |
Compute individual-related cell line
Description
Compute individual-related cell line
Usage
get_cell(cmat, db.path = tempdir(), removeBatchEffect = TRUE, orgDB)
Arguments
cmat |
The RNA-seq count expression profiles of clinical query samples. |
db.path |
A character(1) string with the folder path where the background data was saved. |
removeBatchEffect |
Remove batch effects from expression data using limma (TRUE by default). |
orgDB |
The human annotation db for ID convert. |
Value
A cell line information list.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.