get_estimateScore: Evaluate non-cancer cell infiltration in each subtype
In AllenSpike/CPDR: Cancer Drug Personalized Recommendation (CDPR)
View source: R/get_estimate_score.R
get_estimateScore R Documentation
Evaluate non-cancer cell infiltration in each subtype
Description
Evaluate non-cancer cell infiltration in each subtype
Usage
get_estimateScore(mat, subtype, gs = NULL, doplot = TRUE)
Arguments
mat
Profiles of selected TCGA data set.
subtype
The NMF subtyping result.
gs
A data.frame of 3 columns with Metagene, Cell_type and Annot.
doplot
A logical value. If TRUE, draw the heatmap of non-cancer cell infiltration.
Value
A data.frame of GSVA enrichment scores.
AllenSpike/CPDR documentation built on April 18, 2022, 4:38 p.m.
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View source: R/get_estimate_score.R
| get_estimateScore | R Documentation |
Evaluate non-cancer cell infiltration in each subtype
Description
Evaluate non-cancer cell infiltration in each subtype
Usage
get_estimateScore(mat, subtype, gs = NULL, doplot = TRUE)
Arguments
mat |
Profiles of selected TCGA data set. |
subtype |
The NMF subtyping result. |
gs |
A data.frame of 3 columns with Metagene, Cell_type and Annot. |
doplot |
A logical value. If TRUE, draw the heatmap of non-cancer cell infiltration. |
Value
A data.frame of GSVA enrichment scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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