download_db: Download background data

In AllenSpike/CPDR: Cancer Drug Personalized Recommendation (CDPR)

Download background data

Description

Download background data

Usage

download_db(pset, tset, nset, saveDir = tempdir(), verbose = FALSE)

Arguments

pset	The Pharmacogenomic dataset name. View(pharmaco_sets) for currently available datasets.
tset	The TCGA cancer type name. View(TCGA_sets) for currently available cancer types.
nset	The normal tissue dataset name. Currently available datasets: GTEX.
saveDir	A character(1) string with the folder path where the background data should be saved. Defaults to tempdir(). Will create directory if it does not exist.
verbose	bool Should status messages be printed during download. Defaults to TRUE.

AllenSpike/CPDR documentation built on April 18, 2022, 4:38 p.m.