normalization: Normalize expression data

In AllenTiTaiWang/anamiR: An integrated analysis package of miRNA and mRNA expression data

Description

This function will normalize the given expression data and return it in the same data format.

Usage

normalization(data, method = c("quantile", "normal", "rank.invariant"))

Arguments

data	expression data in matrix format, with sample name in columns and gene symbol or miRNA name in rows.
method	normalization methods, including "quantile", "normal", "rank.invariant". Default is "quantile". As for method "normal", we trim the extreme value and calculate the mean in the data.

Value

SummarizedExperiment for return object.

See Also

normalizeQuantiles for quantile normalization; rankinvariant for rank invariant normalization.

Examples

## Use the internal dataset
data("mirna", package = "anamiR", envir = environment())

## Normalize miRNA expression data
normalization(data = mirna, method = "quantile")

AllenTiTaiWang/anamiR documentation built on May 5, 2019, 4:55 a.m.