plot.mdl_rn: plot.mdl_rn

In Allgeier-Lab/arrR: Individual-Based Simulation Model of Artifical Reefs in R

plot.mdl_rn

Description

Plotting method.

Usage

## S3 method for class 'mdl_rn'
plot(
  x,
  what = "seafloor",
  summarize = FALSE,
  limits = NULL,
  burn_in = TRUE,
  normalize = FALSE,
  verbose = TRUE,
  ...
)

Arguments

x	mdl_rn object.
what	Character specifying what to plot.
summarize	Logical if values over time should be plotted.
limits	Named list with vectors specifying min/max values.
burn_in	If TRUE, line to indicate burn-in time is plotted.
normalize	Logical if TRUE, count is divided by time steps.
verbose	If TRUE, progress reports are printed.
...	Not used.

Details

Plotting method for mdl_rn object simulated with run_simulation. The what arguments allows to either plot the seafloor values or fishpop values. For both, it is possible to either plot a spatial raster at a certain time step, or a summary of the values over all saved time steps (summarize argument).

If a spatial raster is plotted, the limits can be set identical. For more information see get_limits.

Examples

## Not run: 
plot(result_rand)

## End(Not run)

Allgeier-Lab/arrR documentation built on Feb. 13, 2025, 7:44 a.m.