rcpp_mortality: rcpp_mortality
In Allgeier-Lab/arrR: Individual-Based Simulation Model of Artifical Reefs in R

rcpp_mortality

R Documentation

rcpp_mortality

Description

Rcpp simulate (background) mortality.

Usage

rcpp_mortality(
  fishpop,
  fishpop_track,
  seafloor,
  pop_linf,
  pop_n_body,
  pop_reserves_max,
  extent,
  dimensions
)

Arguments

`fishpop`, `fishpop_track`	Matrix with fishpop and starting fishpop values.
`seafloor`	Matrix with seafloor values.
`pop_linf`, `pop_n_body`, `pop_reserves_max`	Numeric with parameters.
`extent`	Vector with extent (xmin,xmax,ymin,ymax).
`dimensions`	Vector with dimensions (nrow, ncol).

Details

Function to simulate background mortality of fish individuals. The mortality probability increases with increasing size and approximates p=1 for pop_linf. If a individual dies, a new individual is created.