rcpp_reincarnate: rcpp_reincarnate

In Allgeier-Lab/arrR: Individual-Based Simulation Model of Artifical Reefs in R

rcpp_reincarnate

Description

Rcpp reincarnate fish indivudals.

Usage

rcpp_reincarnate(
  fishpop,
  fishpop_track,
  fish_id,
  seafloor,
  extent,
  dimensions,
  pop_n_body,
  reason
)

Arguments

fishpop, fishpop_track	Matrix with fishpop and starting fishpop values.
fish_id	Vector with id of fish and corresponding cell ids.
seafloor	Matrix with seafloor values.
extent	Vector with extent (xmin,xmax,ymin,ymax).
dimensions	Vector with dimensions (nrow, ncol).
pop_n_body	Nutrient content of body mass.
reason	String with reason of reincarnation.

Details

Creates a new individual after mortality event. The new individual has the same values as the died individual at the beginning of the simulation.

The mass difference (i.e. current mass minus mass at time step zero) and the reserves of the died individual are added to the detritus pool. The reincarnated individual tries to fill its reserves from the detritus pool if enough nutrients are available.

Value

void

Allgeier-Lab/arrR documentation built on Feb. 13, 2025, 7:44 a.m.