Man pages for AmyOlex/RNASeqBits
Short Scripts to Support RNA-Seq Data Analysis in R
| analyze.contrast | Takes in a dds DESeq2 object and extracts results for a... |
| calc.percentSpeciesExpression | Calculates the percent of gene expression for each listed... |
| calc.tpm | Calculates the TPM values for RNA-seq data. |
| center.palette | Calculates a color palette where zero values are centered at... |
| convert.to.colors | Converts a data frame of factors into a list of numerical... |
| deep.heatmap | Creates an annotated heatmap from DeepTools multiBamSummary... |
| filter.removeZeroSumRows | Removes all rows of a matrix or dataframe where the row sum... |
| load.subreadFormat | Imports raw read counts from SudRead's featureCounts()... |
