calc.tpm: Calculates the TPM values for RNA-seq data.
In AmyOlex/RNASeqBits: Short Scripts to Support RNA-Seq Data Analysis in R
calc.tpm R Documentation
Calculates the TPM values for RNA-seq data.
Description
This function uses the method described at () to calculate the TPM (Transcripts Per Million) values from raw RNA-seq read counts.
Usage
calc.tpm(data)
Arguments
data
A matrix of read count and gene length data with genes as rows and samples as columns. The very first column of the matrix MUST be the gene lengths, and MUST be named "Lengths".
Value
A matrix of TPM expression values.
Author(s)
Amy L. Olex alolex@vcu.edu
Examples
tpm <- calc.tpm(data, features)
AmyOlex/RNASeqBits documentation built on Jan. 26, 2024, 7:08 a.m.
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| calc.tpm | R Documentation |
Calculates the TPM values for RNA-seq data.
Description
This function uses the method described at () to calculate the TPM (Transcripts Per Million) values from raw RNA-seq read counts.
Usage
calc.tpm(data)
Arguments
data |
A matrix of read count and gene length data with genes as rows and samples as columns. The very first column of the matrix MUST be the gene lengths, and MUST be named "Lengths". |
Value
A matrix of TPM expression values.
Author(s)
Amy L. Olex alolex@vcu.edu
Examples
tpm <- calc.tpm(data, features)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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